If you are reading this, I am thankful you are ok.
Yes, as Ron stated, I am a Professional Engineer in Florida practicing structural engineering who examines structural failures.
The short answer is: It is prudent to protect the windows.
You can stop reading here if you'd like.
Aside from projectiles coming in and potentially impaling occupants and the interior, it keeps wind pressures out of the home. Winds develop downward pressure, uplift pressure and lateral pressure (side to side, ie push and suction). Once inside the house, wind will try to blow the house up like a balloon. (The windows act as drains if you will once the wind is inside; and more wind will get in than can get out. Think of pouring a lot of water suddenly into a sink, the water backs up before it all drains out). Winds can also slide an entire roof off the house-that is why straps also have to resist lateral forces, not just uplift.
The important thing about wind is this: The pressures vary as the SQUARE of wind speed, not linearly. Therefore, as an example, the pressures at 100 mph are 4 times higher than winds at 50 mph, not 2 times. And to make it more complicated, the height of the structure above ground plays a significant role.
Regarding egress issues and shutters, there are accordion shutters that have handles on the INSIDE as well. That will allow for escape. Boarding up, or placing panels on the entire house can pose a safety threat if you stay in the home, but it is a balance of risks to address immediate threats. (Winds/tornadoes vs fire or other need to escape. It is a tough call, because neither danger is "better", but you have to make decisions to protect you and your family). Therefore keep an axe or other tools available to break out if necessary.
The 2005 Florida Building Code (FBC) had many changes to improve designs for wind events. One of the revisions after Wilma was to require backer boards on all roof ridges since the ridge tiles were typically only held in place with mortar (which is weak in tension). It was clear to see all of the homes with ridge tiles stripped off (highest wind pressures develop at corners, ridges and edges regardless of wind speed). The cost for repairs was astronomical. Now Code requires mechanical fasteners for tiles on ridges. Reroof projects also require re-nailing of the sheathing with longer nails, and more frequent spacing. (The nailing is one of the questions asked on the mitigation forms for homeowners insurance)
The FBC has been updated in 2007, 2010, 2014 and another revision is coming (even before we knew of Irma).
Honestly, there is so much more to talk about structurally (we have not even discussed forces from wave action), but I do not have a lot of time to post everything that could be discussed here as I am swamped looking at buildings, and writing reports, but I felt a need to help out those in the community who might be reading this.
FYI: wsrainc brings up good points.
Sincerely,
-Jeff